URI: 
       tSimplify and update README - cngf-pf - continuum model for granular flows with pore-pressure dynamics (renamed from 1d_fd_simple_shear)
  HTML git clone git://src.adamsgaard.dk/cngf-pf
   DIR Log
   DIR Files
   DIR Refs
   DIR README
   DIR LICENSE
       ---
   DIR commit 5d4a2cef872d8b3cbb45892042bf5df43a0c7616
   DIR parent add2fbd712616c5abb67c74ff9626b0f9d4890cb
  HTML Author: Anders Damsgaard <anders@adamsgaard.dk>
       Date:   Tue, 24 Mar 2020 14:14:30 +0100
       
       Simplify and update README
       
       Diffstat:
         M README.md                           |     116 ++++++-------------------------
       
       1 file changed, 23 insertions(+), 93 deletions(-)
       ---
   DIR diff --git a/README.md b/README.md
       t@@ -1,99 +1,29 @@
        # 1d_fd_simple_shear
        
       -This project contains a 1d implementation of the [Henann and Kamrin 
       -2013](https://doi.org/10.1073/pnas.1219153110) model under
       -simple shear, with various extensions such as diffusive
       -fluid coupling and cohesion. The granular material is
       -assumed to be in the critical state with constant porosity. See
       -[1d_fd_simple_shear_transient](https://src.adamsgaard.dk/1d_fd_simple_shear_transient)
       -for a second version with variable porosity and strength.
       -
       -## How to run
       -The implementation in C requires a C99-compatible compiler (e.g. `gcc`
       -or `clang`). Visualization requires `gnuplot`. Tests can be run with
       -`make test`, and examples (found in the `examples/` directory) can be
       -run with `make examples`.
       -
       -### Advanced usage
       -The majority of simulation parameters can be adjusted from the command line:
       -
       -```
       -usage: 1d_fd_simple_shear [OPTIONS] [NAME]
       -runs a simulation and outputs state in files prefixed with NAME.
       -If NAME is not specified, intermediate output are not written.
       -
       -Optional arguments:
       - -v, --version                   show version information
       - -h, --help                      show this message
       - -N, --normalize                 normalize output velocity
       - -G, --gravity VAL               gravity magnitude [m/s^2] (default 9.81)
       - -P, --normal-stress VAL         normal stress on top [Pa] (default 120000)
       - -m, --stress-ratio VAL          applied stress ratio [-] (default 0.45)
       - -s, --set-shear-velocity VAL    set top shear velocity to this value [m/s]
       -                                 (default nan), overrides --stress-ratio
       - -l, --limit-shear-velocity VAL  limit top shear velocity to this value [m/s]
       -                                 (default nan), overrides --stress-ratio and
       -                                 --set-shear-velocity
       - -V, --velocity-bottom VAL       base velocity at bottom [m/s] (default 0)
       - -A, --nonlocal-amplitude VAL    amplitude of nonlocality [-] (default 0.4)
       - -b, --rate-dependence VAL       rate dependence beyond yield [-] (default 0.9377)
       - -f, --friction-coefficient VAL  grain friction coefficient [-] (default 0.404026)
       - -C, --cohesion VAL              grain cohesion [Pa] (default 0)
       - -p, --porosity VAL              porosity fraction [-] (default 0.25)
       - -d, --grain-size VAL            representative grain size [m] (default 0.04)
       - -r, --density VAL               grain material density [kg/m^3] (default 2600)
       - -n, --resolution VAL            number of cells in domain [-] (default 100)
       - -o, --origo VAL                 coordinate system origo [m] (default 0)
       - -L, --length VAL                domain length [m] (default 0.7)
       -
       -Optional arguments only relevant with transient (fluid) simulation:
       - -F, --fluid                     enable pore fluid computations
       - -c, --fluid-compressibility VAL fluid compressibility [Pa^-1] (default 3.9e-10)
       - -i, --fluid-viscosity VAL       fluid viscosity [Pa*s] (default 0.001787)
       - -R, --fluid-density VAL         fluid density [kg/m^3] (default 1000)
       - -k, --fluid-permeability VAL    fluid intrinsic permeability [m^2] (default 1.9e-15)
       - -O, --fluid-pressure-top VAL    fluid pressure at +z edge [Pa] (default 0)
       - -a, --fluid-pressure-ampl VAL   amplitude of pressure variations [Pa] (default 0)
       - -q, --fluid-pressure-freq VAL   frequency of pressure variations [s^-1] (default 1)
       - -H, --fluid-pressure-phase VAL  fluid pressure at +z edge [Pa] (default 0)
       - -t, --time VAL                  simulation start time [s] (default 0)
       - -T, --time-end VAL              simulation end time [s] (default 1)
       - -I, --file-interval VAL         interval between output files [s] (default 0.1)
       -
       -```
       +This project contains a 1d implementation of the Henann and Kamrin
       +2013[1] model under simple shear, with various extensions such as
       +diffusive fluid coupling and cohesion.  The granular material is
       +assumed to be in the critical state with constant porosity.  A
       +transient option with non-constant porosity is under development
       +(option -T).
       +
       +## Compiling and installing
       +Requirements are a C99-compatible compiler (e.g. `gcc` or `clang`).
       +Run `make` and `make install` to install the programs and their man
       +pages.
       +
       +## Usage
       +See `man 1d_fd_simple_shear`, `man max_deformation_depth` and `man
       +shear_flux` for usage information.
        
        ## Results
       +A preprint with model results is publically available[2].
        
       -### Strain distribution
       -See below for a comparison with the discrete-element method results from 
       -[Damsgaard et al. 2013](https://doi.org/10.1002/2013JF002830). The continuum 
       -model is not tuned rigorously against the DEM, and the correspondence could 
       -probably be improved further.
       -
       -| Discrete-element model  | Continuum Model |
       -| ----------------------- | --------------- |
       -| Damsgaard et al. 2013   |                 |
       -| ![damsgaard2013-fig8.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/doc/damsgaard2013-fig8.png) | ![1d_fd_simple_shear.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/examples/1d_fd_simple_shear.png) |
       -
       -### Stress and strain rate
       -The rheology is of Bingham type, where no deformation occurs beneath the 
       -Mohr-Coulomb yield limit. Above it, deformation is highly non-linearly viscous. 
       -The model has a parameter *b* for rate dependence beyond yield. Glass beads 
       -have *b* = 0.94 ([Forterre and Pouliquen 
       -2003](https://doi.org/10.1017/S0022112003004555)).
       -
       -| Real material (laboratory or field study)    | Continuum Model |
       -| -------------------------------------------- | --------------- |
       -| Upstream-B ([Kamb 1991](https://doi.org/10.1029/91jb00946)): |                 |
       -| ![kamb1991-fig1.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/doc/kamb1991-fig1.png) | ![1d_fd_simple_shear_rheology_kamb.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/examples/1d_fd_simple_shear_rheology_kamb.png) |
       -| Various subglacial tills ([Iverson 2010](https://doi.org/10.3189/002214311796406220)): |                 |
       -| ![iverson2010-fig2a.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/doc/iverson2010-fig2a.png) | ![1d_fd_simple_shear_rheology_iverson.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/examples/1d_fd_simple_shear_rheology_iverson.png) |
       -| Whillans Ice Plain ([Tulaczyk 2006](https://doi.org/10.3189/172756506781828601)): |                 |
       -| ![tulaczyk2006-fig1.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/doc/tulaczyk2006-fig1.png) | ![1d_fd_simple_shear_rheology_tulaczyk.png](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/examples/1d_fd_simple_shear_rheology_tulaczyk.png) |
       -
       -### Variable water pressure
       -The model is expanded from the Henann and Kamrin 2013 model by including a 
       -diffusive porewater pressure parameterization. Below is an example of diurnal 
       -water-pressure variations that gradually propagate into the bed.
       +## Author
       +Anders Damsgaard <anders@adamsgaard.dk>
       +https://src.adamsgaard.dk/1d_fd_simple_shear
       +ISC licensed, see LICENSE for details.
        
       -![diurnal.gif](https://gitlab.com/admesg/1d_fd_simple_shear/raw/master/examples/diurnal.gif)
       +## References
       +[1]: https://doi.org/10.1073/pnas.1219153110
       +[2]: https://arxiv.org/abs/2002.02436